IL_6OTR_186

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

6OTR|1|XA|U|244, 6OTR|1|XA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OTR_186 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0847

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

6OTR|1|XA|C|242
6OTR|1|XA|A|243
6OTR|1|XA|U|244
6OTR|1|XA|C|245
6OTR|1|XA|A|246
6OTR|1|XA|G|247
*
6OTR|1|XA|C|277
6OTR|1|XA|G|278
6OTR|1|XA|A|279
6OTR|1|XA|C|280
6OTR|1|XA|G|281
6OTR|1|XA|A|282
6OTR|1|XA|C|283
6OTR|1|XA|G|284

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17