IL_6OTR_209

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OTR_209 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0674

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6OTR|1|XA|G|887
6OTR|1|XA|G|888
6OTR|1|XA|A|889
6OTR|1|XA|G|890
6OTR|1|XA|U|891
6OTR|1|XA|A|892
6OTR|1|XA|C|893
6OTR|1|XA|G|894
*
6OTR|1|XA|U|905
6OTR|1|XA|G|906
6OTR|1|XA|A|907
6OTR|1|XA|A|908
6OTR|1|XA|A|909
6OTR|1|XA|C|910

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17