IL_6OUO_035

3D structure

PDB id

6OUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound 70S complex at long incubation time

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6OUO|1|1|A|1143

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OUO_035 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.1287

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6OUO|1|1|U|1018
6OUO|1|1|U|1019
6OUO|1|1|A|1020
6OUO|1|1|A|1021
6OUO|1|1|G|1022
6OUO|1|1|U|1023
6OUO|1|1|G|1024
*
6OUO|1|1|C|1140
6OUO|1|1|U|1141
6OUO|1|1|A|1142
6OUO|1|1|A|1143
6OUO|1|1|A|1144

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain f

50S ribosomal protein L36