IL_6OUO_094

3D structure

PDB id

6OUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound 70S complex at long incubation time

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6OUO|1|1|G|2780

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OUO_094 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1167

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6OUO|1|1|C|2636
6OUO|1|1|U|2637
6OUO|1|1|G|2638
6OUO|1|1|A|2639
6OUO|1|1|G|2640
*
6OUO|1|1|C|2774
6OUO|1|1|G|2775
6OUO|1|1|A|2776
6OUO|1|1|G|2777
6OUO|1|1|A|2778
6OUO|1|1|U|2779
6OUO|1|1|G|2780
6OUO|1|1|A|2781
6OUO|1|1|G|2782

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain J

50S ribosomal protein L13