IL_6OXA_010

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

ACCC*GUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_010 not in the Motif Atlas

Geometric match to IL_8E0F_001

Geometric discrepancy: 0.3954

The information below is about IL_8E0F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

6OXA|1|QA|A|185
6OXA|1|QA|C|186
6OXA|1|QA|C|186|||A
6OXA|1|QA|C|186|||B
*
6OXA|1|QA|G|191|||E
6OXA|1|QA|U|191|||F
6OXA|1|QA|U|192

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20