IL_6OXA_195
3D structure
- PDB id
- 6OXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6OXA|1|XA|A|532, 6OXA|1|XA|U|534, 6OXA|1|XA|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OXA_195 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1932
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6OXA|1|XA|G|515
6OXA|1|XA|U|516
6OXA|1|XA|G|517
6OXA|1|XA|C|518
6OXA|1|XA|C|519
6OXA|1|XA|A|520
6OXA|1|XA|G|521
*
6OXA|1|XA|C|528
6OXA|1|XA|G|529
6OXA|1|XA|G|530
6OXA|1|XA|U|531
6OXA|1|XA|A|532
6OXA|1|XA|A|533
6OXA|1|XA|U|534
6OXA|1|XA|A|535
6OXA|1|XA|C|536
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XC
- 30S ribosomal protein S3
- Chain XD
- 30S ribosomal protein S4
- Chain XL
- 30S ribosomal protein S12
- Chain XX
- mRNA
- Chain XY
- Addiction module toxin, Txe/YoeB family
Coloring options: