IL_6OXA_277

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

6OXA|1|YA|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_277 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.2673

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

6OXA|1|YA|G|1059
6OXA|1|YA|U|1060
6OXA|1|YA|U|1061
6OXA|1|YA|G|1062
*
6OXA|1|YA|C|1076
6OXA|1|YA|A|1077
6OXA|1|YA|U|1078
6OXA|1|YA|C|1079

Current chains

Chain YA

23S rRNA

Nearby chains