IL_6OXI_021
3D structure
- PDB id
- 6OXI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6OXI|1|QA|A|532, 6OXI|1|QA|U|534, 6OXI|1|QA|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OXI_021 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1904
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6OXI|1|QA|G|515
6OXI|1|QA|U|516
6OXI|1|QA|G|517
6OXI|1|QA|C|518
6OXI|1|QA|C|519
6OXI|1|QA|A|520
6OXI|1|QA|G|521
*
6OXI|1|QA|C|528
6OXI|1|QA|G|529
6OXI|1|QA|G|530
6OXI|1|QA|U|531
6OXI|1|QA|A|532
6OXI|1|QA|A|533
6OXI|1|QA|U|534
6OXI|1|QA|A|535
6OXI|1|QA|C|536
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QC
- 30S ribosomal protein S3
- Chain QD
- 30S ribosomal protein S4
- Chain QL
- 30S ribosomal protein S12
- Chain QY
- Addiction module toxin, Txe/YoeB family
Coloring options: