IL_6P4G_034

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6P4G|1|2|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4G_034 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.124

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6P4G|1|2|G|611
6P4G|1|2|U|612
6P4G|1|2|G|613
6P4G|1|2|C|614
6P4G|1|2|C|615
6P4G|1|2|A|616
6P4G|1|2|G|617
*
6P4G|1|2|C|624
6P4G|1|2|G|625
6P4G|1|2|G|626
6P4G|1|2|U|627
6P4G|1|2|A|628
6P4G|1|2|A|629
6P4G|1|2|U|630
6P4G|1|2|U|631
6P4G|1|2|C|632

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

IAPV-IRES

Chain E

uS3

Chain Y

uS12

Chain f

eS30