IL_6P4G_069
3D structure
- PDB id
- 6P4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 6P4G|1|2|U|1494, 6P4G|1|2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P4G_069 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.132
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6P4G|1|2|U|1333
6P4G|1|2|G|1334
6P4G|1|2|G|1335
*
6P4G|1|2|U|1492
6P4G|1|2|C|1493
6P4G|1|2|U|1494
6P4G|1|2|G|1495
6P4G|1|2|U|1496
6P4G|1|2|G|1497
6P4G|1|2|A|1498
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- uS3
- Chain L
- eS10
- Chain V
- uS10
- Chain e
- eS29
Coloring options: