IL_6P4H_052

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4H_052 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.1036

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6P4H|1|2|G|942
6P4H|1|2|U|943
6P4H|1|2|A|944
6P4H|1|2|U|945
*
6P4H|1|2|A|981
6P4H|1|2|G|982
6P4H|1|2|A|983
6P4H|1|2|C|984

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain P

uS11