IL_6P4H_076

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

6P4H|1|2|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4H_076 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3144

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6P4H|1|2|C|1395
6P4H|1|2|A|1396
6P4H|1|2|U|1397
6P4H|1|2|G|1398
6P4H|1|2|C|1399
*
6P4H|1|2|G|1447
6P4H|1|2|A|1448
6P4H|1|2|G|1449
6P4H|1|2|G|1450

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain h

RACK1