IL_6P4H_106

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAUGG*UCUGUGAUG

Length

16 nucleotides

Bulged bases

6P4H|1|2|C|1331, 6P4H|1|2|U|1494, 6P4H|1|2|G|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4H_106 not in the Motif Atlas

Homologous match to IL_8P9A_439

Geometric discrepancy: 0.106

The information below is about IL_8P9A_439

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99893.1

Basepair signature

cWW-tHS-tWH-cWH-cWW-L-L-cWW

Number of instances in this motif group

2

Unit IDs

6P4H|1|2|U|1329
6P4H|1|2|G|1330
6P4H|1|2|C|1331
6P4H|1|2|A|1332
6P4H|1|2|U|1333
6P4H|1|2|G|1334
6P4H|1|2|G|1335
*
6P4H|1|2|U|1492
6P4H|1|2|C|1493
6P4H|1|2|U|1494
6P4H|1|2|G|1495
6P4H|1|2|U|1496
6P4H|1|2|G|1497
6P4H|1|2|A|1498
6P4H|1|2|U|1499
6P4H|1|2|G|1500

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

IAPV-IRES

Chain E

uS3

Chain L

eS10

Chain V

uS10

Chain e

eS29