IL_6P5I_143
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6P5I|1|5|A|1650, 6P5I|1|5|G|1654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5I_143 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.0728
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6P5I|1|5|G|1522
6P5I|1|5|A|1523
6P5I|1|5|A|1524
6P5I|1|5|A|1525
6P5I|1|5|G|1526
*
6P5I|1|5|C|1648
6P5I|1|5|U|1649
6P5I|1|5|A|1650
6P5I|1|5|G|1651
6P5I|1|5|U|1652
6P5I|1|5|A|1653
6P5I|1|5|G|1654
6P5I|1|5|C|1655
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AC
- uL4
- Chain AL
- eL13
- Chain AN
- eL15
- Chain Aa
- uL15
- Chain Aj
- eL37
Coloring options: