IL_6P5I_163
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5I_163 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.147
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
6P5I|1|5|C|1911
6P5I|1|5|G|1912
6P5I|1|5|C|1913
6P5I|1|5|C|1914
6P5I|1|5|C|1915
6P5I|1|5|G|1916
6P5I|1|5|A|1917
6P5I|1|5|U|1918
*
6P5I|1|5|G|2064
6P5I|1|5|G|2065
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AF
- uL30
- Chain AO
- uL13
- Chain AS
- eL20
- Chain Af
- eL33
Coloring options: