IL_6P5I_169

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6P5I|1|5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_169 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.3697

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6P5I|1|5|U|1957
6P5I|1|5|A|1958
6P5I|1|5|U|1959
6P5I|1|5|A|1960
6P5I|1|5|G|1961
6P5I|1|5|A|1962
6P5I|1|5|C|1963
6P5I|1|5|A|1964
6P5I|1|5|G|1965
*
6P5I|1|5|C|2022
6P5I|1|5|C|2023
6P5I|1|5|G|2024
6P5I|1|5|A|2025
6P5I|1|5|A|2026

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Am

eL40