IL_6P5I_187
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 6P5I|1|5|U|2661, 6P5I|1|5|A|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5I_187 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.154
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6P5I|1|5|U|2656
6P5I|1|5|G|2657
6P5I|1|5|G|2658
6P5I|1|5|A|2659
6P5I|1|5|A|2660
6P5I|1|5|U|2661
6P5I|1|5|G|2662
*
6P5I|1|5|C|2672
6P5I|1|5|G|2673
6P5I|1|5|A|2674
6P5I|1|5|G|2675
6P5I|1|5|A|2676
6P5I|1|5|G|2677
6P5I|1|5|A|2678
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AR
- eL19
- Chain AZ
- eL27
- Chain Ac
- eL30
- Chain Ag
- eL34
- Chain Ap
- eL43
- Chain O
- uS15
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