IL_6P5J_028
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5J_028 not in the Motif Atlas
- Geometric match to IL_7RQB_031
- Geometric discrepancy: 0.3701
- The information below is about IL_7RQB_031
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_46796.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
6P5J|1|2|U|801
6P5J|1|2|A|802
6P5J|1|2|C|803
*
6P5J|1|2|G|860
6P5J|1|2|A|861
6P5J|1|2|A|862
6P5J|1|2|U|863
6P5J|1|2|A|864
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain I
- eS7
- Chain M
- uS17
- Chain X
- uS8
- Chain Y
- uS12
Coloring options: