IL_6P5J_060

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAC*GCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5J_060 not in the Motif Atlas

Homologous match to IL_4V88_461

Geometric discrepancy: 0.3628

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6P5J|1|2|C|1559
6P5J|1|2|U|1560
6P5J|1|2|A|1561
6P5J|1|2|C|1562
*
6P5J|1|2|G|1573
6P5J|1|2|C|1574
6P5J|1|2|G|1575
6P5J|1|2|G|1576

Current chains

Chain 2

18S rRNA

Nearby chains

Chain U

eS19