IL_6P5J_076

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5J_076 not in the Motif Atlas

Geometric match to IL_4J50_001

Geometric discrepancy: 0.1934

The information below is about IL_4J50_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

6P5J|1|5|G|16
6P5J|1|5|A|17
6P5J|1|5|C|18
*
6P5J|1|8|G|139
6P5J|1|8|C|140
6P5J|1|8|C|141

Current chains

Chain 5

28S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain AN

eL15

Chain AX

eL23

Chain Ah

eL35

Chain Aj

eL37