IL_6P5J_078
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5J_078 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.1675
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6P5J|1|5|C|30
6P5J|1|5|U|31
6P5J|1|5|G|32
6P5J|1|5|A|33
6P5J|1|5|A|34
6P5J|1|5|U|35
6P5J|1|5|U|36
6P5J|1|5|U|37
*
6P5J|1|5|A|44
6P5J|1|5|U|45
6P5J|1|5|U|46
6P5J|1|5|A|47
6P5J|1|5|G|48
6P5J|1|5|U|49
6P5J|1|5|C|50
6P5J|1|5|A|51
6P5J|1|5|G|52
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AL
- eL13
- Chain AN
- eL15
- Chain Aa
- uL15
- Chain Aj
- eL37
- Chain Ao
- eL42
Coloring options: