IL_6P5J_101

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

6P5J|1|5|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5J_101 not in the Motif Atlas

Geometric match to IL_4V88_409

Geometric discrepancy: 0.3361

The information below is about IL_4V88_409

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6P5J|1|5|G|508
6P5J|1|5|A|509
6P5J|1|5|U|510
*
6P5J|1|5|A|649
6P5J|1|5|C|650

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AL

eL13

Chain Aa

uL15