IL_6P5J_174
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 6P5J|1|5|A|3663, 6P5J|1|5|U|3679, 6P5J|1|5|C|3683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5J_174 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.0804
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6P5J|1|5|C|3660
6P5J|1|5|G|3661
6P5J|1|5|A|3662
6P5J|1|5|A|3663
6P5J|1|5|G|3664
6P5J|1|5|G|3665
*
6P5J|1|5|U|3677
6P5J|1|5|G|3678
6P5J|1|5|U|3679
6P5J|1|5|U|3680
6P5J|1|5|G|3681
6P5J|1|5|A|3682
6P5J|1|5|C|3683
6P5J|1|5|G|3684
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AA
- uL2
- Chain Ap
- eL43
Coloring options: