IL_6P5J_195
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGACC*GCA
- Length
- 8 nucleotides
- Bulged bases
- 6P5J|1|5|C|4349
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5J_195 not in the Motif Atlas
- Geometric match to IL_4P3T_002
- Geometric discrepancy: 0.2712
- The information below is about IL_4P3T_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_01472.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
6P5J|1|5|U|4346
6P5J|1|5|G|4347
6P5J|1|5|A|4348
6P5J|1|5|C|4349
6P5J|1|5|C|4350
*
6P5J|1|5|G|4364
6P5J|1|5|C|4365
6P5J|1|5|A|4366
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AL
- eL13
- Chain AQ
- eL18
- Chain Aa
- uL15
- Chain Ao
- eL42
Coloring options: