IL_6P5J_235

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUCUC*GAUCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5J_235 not in the Motif Atlas

Geometric match to IL_7RQB_114

Geometric discrepancy: 0.1751

The information below is about IL_7RQB_114

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.6

Basepair signature

cWW-cWS-L-tSW-L-cWW

Number of instances in this motif group

8

Unit IDs

6P5J|1|7|A|32
6P5J|1|7|U|33
6P5J|1|7|C|34
6P5J|1|7|U|35
6P5J|1|7|C|36
*
6P5J|1|7|G|41
6P5J|1|7|A|42
6P5J|1|7|U|43
6P5J|1|7|C|44
6P5J|1|7|U|45

Current chains

Chain 7

5S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain AD

uL18

Chain AJ

uL11