IL_6P5J_244
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGGGG*CCAAG
- Length
- 11 nucleotides
- Bulged bases
- 6P5J|1|2|G|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5J_244 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.3013
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6P5J|1|2|C|931
6P5J|1|2|G|932
6P5J|1|2|G|933
6P5J|1|2|G|934
6P5J|1|2|G|935
6P5J|1|2|G|936
*
6P5J|1|2|C|1006
6P5J|1|2|C|1007
6P5J|1|2|A|1008
6P5J|1|2|A|1009
6P5J|1|2|G|1010
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain Ac
- eL30
- Chain C
- eS1
- Chain O
- uS15
- Chain b
- eS26
Coloring options: