IL_6P5J_292

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

6P5J|1|5|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5J_292 not in the Motif Atlas

Homologous match to IL_8P9A_290

Geometric discrepancy: 0.4278

The information below is about IL_8P9A_290

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6P5J|1|5|U|2415
6P5J|1|5|G|2416
6P5J|1|5|A|2417
6P5J|1|5|A|2418
6P5J|1|5|C|2419
*
6P5J|1|5|G|2427
6P5J|1|5|A|2428
6P5J|1|5|A|2429

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AP

uL22

Chain AR

eL19

Chain Al

eL39