IL_6P5J_294
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AACAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5J_294 not in the Motif Atlas
- Homologous match to IL_8P9A_302
- Geometric discrepancy: 0.1041
- The information below is about IL_8P9A_302
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89862.1
- Basepair signature
- cWW-L-tHS-L-R-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6P5J|1|5|A|2832
6P5J|1|5|A|2833
6P5J|1|5|C|2834
6P5J|1|5|A|2835
6P5J|1|5|A|2836
6P5J|1|5|U|2837
6P5J|1|5|G|2838
*
6P5J|1|5|C|3850
6P5J|1|5|U|3851
6P5J|1|5|A|3852
6P5J|1|5|U|3853
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AB
- uL3
- Chain AP
- uL22
- Chain Ad
- eL31
Coloring options: