3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUU*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_009 not in the Motif Atlas
Geometric match to IL_1T0E_002
Geometric discrepancy: 0.1598
The information below is about IL_1T0E_002
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_28037.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
65

Unit IDs

6P5K|1|2|G|108
6P5K|1|2|U|109
6P5K|1|2|U|110
*
6P5K|1|2|G|351
6P5K|1|2|U|352
6P5K|1|2|C|353

Current chains

Chain 2
18S rRNA

Nearby chains

Chain F
eS4
Chain J
eS8
Chain M
uS17

Coloring options:


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