IL_6P5K_014

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6P5K|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_014 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1588

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6P5K|1|2|G|145
6P5K|1|2|G|146
6P5K|1|2|A|147
6P5K|1|2|U|148
6P5K|1|2|A|149
6P5K|1|2|A|150
6P5K|1|2|C|151
*
6P5K|1|2|G|167
6P5K|1|2|C|168
6P5K|1|2|U|169
6P5K|1|2|A|170
6P5K|1|2|A|171
6P5K|1|2|U|172
6P5K|1|2|A|173
6P5K|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

eS24