3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGG*CGAUUC
Length
9 nucleotides
Bulged bases
6P5K|1|2|U|428
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_023 not in the Motif Atlas
Homologous match to IL_4V88_404
Geometric discrepancy: 0.1485
The information below is about IL_4V88_404
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_11347.3
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
2

Unit IDs

6P5K|1|2|G|411
6P5K|1|2|G|412
6P5K|1|2|G|413
*
6P5K|1|2|C|424
6P5K|1|2|G|425
6P5K|1|2|A|426
6P5K|1|2|U|427
6P5K|1|2|U|428
6P5K|1|2|C|429

Current chains

Chain 2
18S rRNA

Nearby chains

Chain F
eS4
Chain K
uS4
Chain Y
uS12

Coloring options:


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