IL_6P5K_023
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGG*CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 6P5K|1|2|U|428
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_023 not in the Motif Atlas
- Homologous match to IL_4V88_404
- Geometric discrepancy: 0.1485
- The information below is about IL_4V88_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11347.3
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6P5K|1|2|G|411
6P5K|1|2|G|412
6P5K|1|2|G|413
*
6P5K|1|2|C|424
6P5K|1|2|G|425
6P5K|1|2|A|426
6P5K|1|2|U|427
6P5K|1|2|U|428
6P5K|1|2|C|429
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- eS4
- Chain K
- uS4
- Chain Y
- uS12
Coloring options: