3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUCCA*UUAAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_031 not in the Motif Atlas
Geometric match to IL_4V88_422
Geometric discrepancy: 0.344
The information below is about IL_4V88_422
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_05145.3
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
13

Unit IDs

6P5K|1|2|G|565
6P5K|1|2|U|566
6P5K|1|2|C|567
6P5K|1|2|C|568
6P5K|1|2|A|569
*
6P5K|1|2|U|581
6P5K|1|2|U|582
6P5K|1|2|A|583
6P5K|1|2|A|584
6P5K|1|2|C|585

Current chains

Chain 2
18S rRNA

Nearby chains

Chain K
uS4
Chain Z
eS24

Coloring options:


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