IL_6P5K_035

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6P5K|1|2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_035 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1309

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6P5K|1|2|G|665
6P5K|1|2|U|666
6P5K|1|2|U|667
6P5K|1|2|A|668
6P5K|1|2|A|669
6P5K|1|2|A|670
6P5K|1|2|A|671
*
6P5K|1|2|U|1161
6P5K|1|2|C|1162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5

Chain Y

uS12

Chain b

eS26