IL_6P5K_035
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 6P5K|1|2|A|668
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_035 not in the Motif Atlas
- Geometric match to IL_4LFB_022
- Geometric discrepancy: 0.1309
- The information below is about IL_4LFB_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.6
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 4
Unit IDs
6P5K|1|2|G|665
6P5K|1|2|U|666
6P5K|1|2|U|667
6P5K|1|2|A|668
6P5K|1|2|A|669
6P5K|1|2|A|670
6P5K|1|2|A|671
*
6P5K|1|2|U|1161
6P5K|1|2|C|1162
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- uS5
- Chain Y
- uS12
- Chain b
- eS26
Coloring options: