IL_6P5K_051

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAU*GCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_051 not in the Motif Atlas

Geometric match to IL_4V88_438

Geometric discrepancy: 0.1412

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6P5K|1|2|C|1098
6P5K|1|2|G|1099
6P5K|1|2|A|1100
6P5K|1|2|U|1101
*
6P5K|1|2|G|1131
6P5K|1|2|C|1132
6P5K|1|2|A|1133
6P5K|1|2|G|1134

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2

Chain C

eS1

Chain O

uS15

Chain S

eS17

Chain b

eS26