IL_6P5K_054

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_054 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0811

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6P5K|1|2|G|1168
6P5K|1|2|G|1169
6P5K|1|2|A|1170
6P5K|1|2|G|1171
6P5K|1|2|U|1172
6P5K|1|2|A|1173
6P5K|1|2|U|1174
6P5K|1|2|G|1175
*
6P5K|1|2|U|1186
6P5K|1|2|G|1187
6P5K|1|2|A|1188
6P5K|1|2|A|1189
6P5K|1|2|A|1190
6P5K|1|2|C|1191

Current chains

Chain 2

18S rRNA

Nearby chains

Chain An

eL41

Chain Y

uS12