3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGCU*AAAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_079 not in the Motif Atlas
Homologous match to IL_8CRE_469
Geometric discrepancy: 0.2901
The information below is about IL_8CRE_469
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_11399.2
Basepair signature
cWW-cHW-L-R-L-cWW
Number of instances in this motif group
3

Unit IDs

6P5K|1|2|C|1708
6P5K|1|2|G|1709
6P5K|1|2|C|1710
6P5K|1|2|U|1711
*
6P5K|1|2|A|1822
6P5K|1|2|A|1823
6P5K|1|2|A|1824
6P5K|1|2|A|1825
6P5K|1|2|G|1826

Current chains

Chain 2
18S rRNA

Nearby chains

Chain 1
IAPV-IRES
Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain An
eL41
Chain Y
uS12

Coloring options:


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