IL_6P5K_079
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_079 not in the Motif Atlas
- Homologous match to IL_8CRE_469
- Geometric discrepancy: 0.2901
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11399.2
- Basepair signature
- cWW-cHW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
6P5K|1|2|C|1708
6P5K|1|2|G|1709
6P5K|1|2|C|1710
6P5K|1|2|U|1711
*
6P5K|1|2|A|1822
6P5K|1|2|A|1823
6P5K|1|2|A|1824
6P5K|1|2|A|1825
6P5K|1|2|G|1826
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- IAPV-IRES
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- eL41
- Chain Y
- uS12
Coloring options: