3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUG*UA
Length
5 nucleotides
Bulged bases
6P5K|1|2|U|1721
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_082 not in the Motif Atlas
Geometric match to IL_4V88_469
Geometric discrepancy: 0.1714
The information below is about IL_4V88_469
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

6P5K|1|2|U|1720
6P5K|1|2|U|1721
6P5K|1|2|G|1722
*
6P5K|1|2|U|1812
6P5K|1|2|A|1813

Current chains

Chain 2
18S rRNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain AV
uL14
Chain An
eL41
Chain Y
uS12

Coloring options:


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