IL_6P5K_091
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAC*GCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_091 not in the Motif Atlas
- Geometric match to IL_3ICQ_003
- Geometric discrepancy: 0.1416
- The information below is about IL_3ICQ_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70707.3
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 70
Unit IDs
6P5K|1|5|G|16
6P5K|1|5|A|17
6P5K|1|5|C|18
*
6P5K|1|8|G|139
6P5K|1|8|C|140
6P5K|1|8|C|141
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain AN
- eL15
- Chain AX
- eL23
- Chain Ah
- eL35
- Chain Aj
- eL37
Coloring options: