IL_6P5K_095

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

6P5K|1|5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_095 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2377

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

6P5K|1|5|C|118
6P5K|1|5|G|119
6P5K|1|5|A|120
6P5K|1|5|A|121
*
6P5K|1|5|U|152
6P5K|1|5|G|153

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AG

eL8

Chain AN

eL15

Chain Ah

eL35