IL_6P5K_095
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAA*UG
- Length
- 6 nucleotides
- Bulged bases
- 6P5K|1|5|G|119
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_095 not in the Motif Atlas
- Geometric match to IL_1U9S_003
- Geometric discrepancy: 0.2377
- The information below is about IL_1U9S_003
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- Major groove intercalation
- Motif group
- IL_82107.4
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
6P5K|1|5|C|118
6P5K|1|5|G|119
6P5K|1|5|A|120
6P5K|1|5|A|121
*
6P5K|1|5|U|152
6P5K|1|5|G|153
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AG
- eL8
- Chain AN
- eL15
- Chain Ah
- eL35
Coloring options: