3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGUC*GCUAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_106 not in the Motif Atlas
Geometric match to IL_7MLW_007
Geometric discrepancy: 0.3412
The information below is about IL_7MLW_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_99358.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
8

Unit IDs

6P5K|1|5|G|443
6P5K|1|5|G|444
6P5K|1|5|U|445
6P5K|1|5|C|446
*
6P5K|1|5|G|1300
6P5K|1|5|C|1301
6P5K|1|5|U|1302
6P5K|1|5|A|1303
6P5K|1|5|C|1304

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain Ae
eL32
Chain Af
eL33

Coloring options:


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