IL_6P5K_126

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

6P5K|1|5|C|1214, 6P5K|1|5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_126 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.2922

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6P5K|1|5|C|1082
6P5K|1|5|U|1083
6P5K|1|5|C|1084
*
6P5K|1|5|G|1213
6P5K|1|5|C|1214
6P5K|1|5|C|1215
6P5K|1|5|C|1216
6P5K|1|5|G|1217

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AF

uL30

Chain Ab

eL29