3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGAUC*GCGCAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_132 not in the Motif Atlas
Geometric match to IL_4V9F_018
Geometric discrepancy: 0.311
The information below is about IL_4V9F_018
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_97631.1
Basepair signature
cWW-L-R-L-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

6P5K|1|5|G|1425
6P5K|1|5|G|1426
6P5K|1|5|A|1427
6P5K|1|5|U|1428
6P5K|1|5|C|1429
*
6P5K|1|5|G|1455
6P5K|1|5|C|1456
6P5K|1|5|G|1457
6P5K|1|5|C|1458
6P5K|1|5|A|1459
6P5K|1|5|C|1460

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AQ
eL18
Chain Ab
eL29

Coloring options:


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