IL_6P5K_132

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_132 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.311

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6P5K|1|5|G|1425
6P5K|1|5|G|1426
6P5K|1|5|A|1427
6P5K|1|5|U|1428
6P5K|1|5|C|1429
*
6P5K|1|5|G|1455
6P5K|1|5|C|1456
6P5K|1|5|G|1457
6P5K|1|5|C|1458
6P5K|1|5|A|1459
6P5K|1|5|C|1460

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AQ

eL18

Chain Ab

eL29