IL_6P5K_142
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 6P5K|1|5|G|1625, 6P5K|1|5|A|1637, 6P5K|1|5|A|1638
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_142 not in the Motif Atlas
- Homologous match to IL_8C3A_036
- Geometric discrepancy: 0.0757
- The information below is about IL_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6P5K|1|5|G|1624
6P5K|1|5|G|1625
6P5K|1|5|G|1626
*
6P5K|1|5|U|1636
6P5K|1|5|A|1637
6P5K|1|5|A|1638
6P5K|1|5|U|1639
6P5K|1|5|C|1640
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AA
- uL2
- Chain AN
- eL15
- Chain AP
- uL22
- Chain Aj
- eL37
Coloring options: