IL_6P5K_156
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUAAG*CCAUA
- Length
- 10 nucleotides
- Bulged bases
- 6P5K|1|5|U|2070
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_156 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.1246
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
6P5K|1|5|U|1905
6P5K|1|5|U|1906
6P5K|1|5|A|1907
6P5K|1|5|A|1908
6P5K|1|5|G|1909
*
6P5K|1|5|C|2067
6P5K|1|5|C|2068
6P5K|1|5|A|2069
6P5K|1|5|U|2070
6P5K|1|5|A|2071
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain AF
- uL30
- Chain AQ
- eL18
- Chain Ae
- eL32
- Chain Af
- eL33
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