3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUAAG*CCAUA
Length
10 nucleotides
Bulged bases
6P5K|1|5|U|2070
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_156 not in the Motif Atlas
Homologous match to IL_8C3A_051
Geometric discrepancy: 0.1246
The information below is about IL_8C3A_051
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

6P5K|1|5|U|1905
6P5K|1|5|U|1906
6P5K|1|5|A|1907
6P5K|1|5|A|1908
6P5K|1|5|G|1909
*
6P5K|1|5|C|2067
6P5K|1|5|C|2068
6P5K|1|5|A|2069
6P5K|1|5|U|2070
6P5K|1|5|A|2071

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain AF
uL30
Chain AQ
eL18
Chain Ae
eL32
Chain Af
eL33

Coloring options:


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