3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GACCCCAGAAAA*UGAAAAUGGAUGGCGC
Length
28 nucleotides
Bulged bases
6P5K|1|5|C|1935, 6P5K|1|5|A|2041
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_161 not in the Motif Atlas
Geometric match to IL_5TBW_052
Geometric discrepancy: 0.2058
The information below is about IL_5TBW_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53762.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

6P5K|1|5|G|1933
6P5K|1|5|A|1934
6P5K|1|5|C|1935
6P5K|1|5|C|1936
6P5K|1|5|C|1937
6P5K|1|5|C|1938
6P5K|1|5|A|1939
6P5K|1|5|G|1940
6P5K|1|5|A|1941
6P5K|1|5|A|1942
6P5K|1|5|A|1943
6P5K|1|5|A|1944
*
6P5K|1|5|U|2038
6P5K|1|5|G|2039
6P5K|1|5|A|2040
6P5K|1|5|A|2041
6P5K|1|5|A|2042
6P5K|1|5|A|2043
6P5K|1|5|U|2044
6P5K|1|5|G|2045
6P5K|1|5|G|2046
6P5K|1|5|A|2047
6P5K|1|5|U|2048
6P5K|1|5|G|2049
6P5K|1|5|G|2050
6P5K|1|5|C|2051
6P5K|1|5|G|2052
6P5K|1|5|C|2053

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain AB
uL3
Chain AI
uL16
Chain AO
uL13
Chain Af
eL33
Chain Am
eL40

Coloring options:


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