3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUGAG*CGAAAG
Length
11 nucleotides
Bulged bases
6P5K|1|5|A|2512, 6P5K|1|5|A|2513
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_171 not in the Motif Atlas
Homologous match to IL_8C3A_067
Geometric discrepancy: 0.1091
The information below is about IL_8C3A_067
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

6P5K|1|5|C|2446
6P5K|1|5|U|2447
6P5K|1|5|G|2448
6P5K|1|5|A|2449
6P5K|1|5|G|2450
*
6P5K|1|5|C|2509
6P5K|1|5|G|2510
6P5K|1|5|A|2511
6P5K|1|5|A|2512
6P5K|1|5|A|2513
6P5K|1|5|G|2514

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain AA
uL2
Chain Ag
eL34
Chain Aj
eL37
Chain Al
eL39

Coloring options:


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