IL_6P5K_174

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

6P5K|1|5|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_174 not in the Motif Atlas

Geometric match to IL_2A64_002

Geometric discrepancy: 0.2522

The information below is about IL_2A64_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6P5K|1|5|G|2549
6P5K|1|5|G|2550
*
6P5K|1|5|C|2768
6P5K|1|5|U|2769
6P5K|1|5|C|2770

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Ag

eL34