IL_6P5K_186
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 6P5K|1|5|U|2880
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_186 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.0768
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_47346.2
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6P5K|1|5|C|2867
6P5K|1|5|G|2868
6P5K|1|5|U|2869
6P5K|1|5|A|2870
6P5K|1|5|A|2871
6P5K|1|5|C|2872
*
6P5K|1|5|G|2877
6P5K|1|5|G|2878
6P5K|1|5|A|2879
6P5K|1|5|U|2880
6P5K|1|5|A|2881
6P5K|1|5|A|2882
6P5K|1|5|G|2883
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain An
- eL41
- Chain Ap
- eL43
Coloring options: