3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UCAAAGU*AAUGAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_194 not in the Motif Atlas
Homologous match to IL_8C3A_093
Geometric discrepancy: 0.1904
The information below is about IL_8C3A_093
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_36973.8
Basepair signature
cWW-tSH-L-R-L-R-L-R-cWW-cWW
Number of instances in this motif group
3

Unit IDs

6P5K|1|5|U|3715
6P5K|1|5|C|3716
6P5K|1|5|A|3717
6P5K|1|5|A|3718
6P5K|1|5|A|3719
6P5K|1|5|G|3720
6P5K|1|5|U|3721
*
6P5K|1|5|A|3732
6P5K|1|5|A|3733
6P5K|1|5|U|3734
6P5K|1|5|G|3735
6P5K|1|5|A|3736
6P5K|1|5|A|3737
6P5K|1|5|G|3738

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AA
uL2
Chain Ai
eL36
Chain Ao
eL42

Coloring options:


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