IL_6P5K_197
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 6P5K|1|5|A|3785, 6P5K|1|5|C|3791, 6P5K|1|5|C|3810
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_197 not in the Motif Atlas
- Homologous match to IL_5TBW_090
- Geometric discrepancy: 0.0828
- The information below is about IL_5TBW_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6P5K|1|5|C|3781
6P5K|1|5|C|3782
6P5K|1|5|A|3783
6P5K|1|5|A|3784
6P5K|1|5|A|3785
6P5K|1|5|U|3786
6P5K|1|5|G|3787
6P5K|1|5|C|3788
6P5K|1|5|C|3789
6P5K|1|5|U|3790
6P5K|1|5|C|3791
6P5K|1|5|G|3792
*
6P5K|1|5|C|3808
6P5K|1|5|G|3809
6P5K|1|5|C|3810
6P5K|1|5|G|3811
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain An
- eL41
Coloring options: